Recent Publications

Publications from CMSI affiliates in the past quarter:

Arroyo-Esquivel, Jorge, Alan Hastings, and Marissa L. Baskett. 2023. “Local Interactions Affect Spread of Resource in a Consumer-Resource System with Group Defense.” Theoretical Ecology 16 (4): 303–14. https://doi.org/10.1007/s12080-023-00569-x.

Bibler, Andrew, Mouhcine Guettabi, and Matthew Reimer. 2019. “Short-Term Labor Responses to Unconditional Cash Transfers.” SSRN Electronic Journal, January. https://doi.org/10.2139/ssrn.3357230.

Boles, Sara E., Laura Rogers-Bennett, Wendy K. Bragg, Jessica Bredvik-Curran, Suzanne Graham, and Jackson A. Gross. 2023. “Determination of Gonad Reproductive State Using Non-Lethal Ultrasonography in Endangered Black (Haliotis Cracherodii) and White Abalone (H. Sorenseni).” Frontiers in Marine Science 10. https://www.frontiersin.org/articles/10.3389/fmars.2023.1134844.

Con, Pazit, Jens Hamar, Jakob Biran, Dietmar Kültz, and Avner Cnaani. 2024. “Cell-Based Homologous Expression System for in-Vitro Characterization of Environmental Effects on Transmembrane Peptide Transport in Fish.” Current Research in Physiology 7 (January): 100118. https://doi.org/10.1016/j.crphys.2024.100118.

Dick, Cory, Wesley A. Larson, Kirby Karpan, Diana S. Baetscher, Yue Shi, Suresh Sethi, Nann A. Fangue, and Mark J. Henderson. n.d. “Prey Ration, Temperature, and Predator Species Influence Digestion Rates of Prey DNA Inferred from qPCR and Metabarcoding.” Molecular Ecology Resources n/a (n/a). Accessed October 4, 2023. https://doi.org/10.1111/1755-0998.13849.

Gmoser-Daskalakis, Kyra, Tyler A. Scott, Mark Lubell, and Francesca P. Vantaggiato. 2023. “An Item Response Approach to Sea-Level Rise Policy Preferences in a Nascent Subsystem.” Review of Policy Research 40 (6): 972–1003. https://doi.org/10.1111/ropr.12520.

Golden, Abigail S, Marissa L Baskett, Dan Holland, Arielle Levine, Kathy Mills, and Timothy Essington. 2023. “Climate Adaptation Depends on Rebalancing Flexibility and Rigidity in US Fisheries Management.” ICES Journal of Marine Science, December, fsad189. https://doi.org/10.1093/icesjms/fsad189.

Griffin, Alyssa J., Zachary Anderson, John Ballard, Nicholas R. Bates, Rebecca Garley, Rod Johnson, Todd Martz, Fernando Pacheco, Yuichiro Takeshita, and Andreas J. Andersson. 2022. “Seasonal Changes in Seawater Calcium and Alkalinity in the Sargasso Sea and across the Bermuda Carbonate Platform.” Marine Chemistry 238 (January): 104064. https://doi.org/10.1016/j.marchem.2021.104064.

Gross, Edward, Rusty Holleman, Wim Kimmerer, Sophie Munger, Scott Burdick, and John Durand. 2023. “Using Age Tracers to Estimate Ecological Rates in a Phytoplankton Model.” Water 15 (11): 2097. https://doi.org/10.3390/w15112097.

Hock, Karlo, Alan Hastings, Christopher Doropoulos, Russell C. Babcock, Juan C. Ortiz, Angus Thompson, and Peter J. Mumby. 2023. “Transient Dynamics Mask the Resilience of Coral Reefs.” Theoretical Ecology, December. https://doi.org/10.1007/s12080-023-00570-4.

Huang, Chien-shih, Mark Lubell, and Francesca P. Vantaggiato. 2023. “Geographic Scale Dependency and the Structure of Climate Adaptation Policy Networks in San Francisco Bay.” Ecology and Society 28 (4). https://doi.org/10.5751/ES-14403-280430.

Huff Hartz, Kara E., Katie J. Knaub, Md Habibullah Al-Mamun, Richard E. Connon, Greg W. Whitledge, Amélie Segarra, and Michael J. Lydy. 2024. “Using an Internal Body Residue Approach to Assess Acute Pesticide Toxicity in Juvenile Chinook Salmon (Oncorhynchus Tshawytscha).” Environmental Pollution, January, 123364. https://doi.org/10.1016/j.envpol.2024.123364.

Kardish, Melissa, and John Stachowicz. 2023. “Local Environment Drives Rapid Shifts in Composition and Phylogenetic Clustering of Seagrass Microbiomes.” Scientific Reports 13 (3673). https://doi.org/10.1038/s41598-023-30194-x.

Kennedy, E. G. 2023. “A High-Resolution Synthesis Dataset for Multistressor Analyses along the US West Coast.” Earth System Science Data. https://doi.org/10.5194/essd-2023-205.

Kieran Blair, Shannon Rose, Andrea Schreier, Merly Escalona, Amanda J Finger, Shannon E K Joslin, Ruta Sahasrabudhe, Mohan P A Marimuthu, et al. 2023. “A Draft Reference Genome of the Vernal Pool Fairy Shrimp, Branchinecta Lynchi.” Journal of Heredity 114 (1): 81–87. https://doi.org/10.1093/jhered/esac056.

Mihalitsis, Michalis, David R. Bellwood, and Peter C. Wainwright. 2023. “Sit and Survive: Predation Avoidance by Cryptobenthic Coral Reef Fishes.” Marine Biology 171 (1): 7. https://doi.org/10.1007/s00227-023-04330-0.

Mihalitsis, Michalis, and Peter C. Wainwright. 2024. “Feeding Kinematics of a Surgeonfish Reveal Novel Functions and Relationships to Reef Substrata.” Communications Biology 7 (1): 1–12. https://doi.org/10.1038/s42003-023-05696-z.

Morozov, Andrew Yu., Dalal Almutairi, Sergei V. Petrovskii, and Alan Hastings. 2024. “Regime Shifts, Extinctions and Long Transients in Models of Population Dynamics with Density-Dependent Dispersal.” Biological Conservation 290 (February): 110419. https://doi.org/10.1016/j.biocon.2023.110419.

Neylan, Isabelle P., Daniel S. Swezey, Sara E. Boles, Jackson A. Gross, Andrew Sih, and John J. Stachowicz. 2024. “Within- and Transgenerational Stress Legacy Effects of Ocean Acidification on Red Abalone (Haliotis Rufescens) Growth and Survival.” Global Change Biology 30 (1): e17048. https://doi.org/10.1111/gcb.17048.

Okamoto, Daniel K., Nathan B. Spindel, Brenna Collicutt, Maya J. Mustermann, Sam Karelitz, Iria Gimenez, Kate Rolheiser, et al. 2023. “Thermal Suppression of Gametogenesis Explains Historical Collapses in Larval Recruitment.” bioRxiv. https://doi.org/10.1101/2023.09.28.559919.

Pasparakis, Christina, Toni Lohroff, Felix Biefel, Dennis E Cocherell, Evan W Carson, Tien-Chieh Hung, Richard E Connon, Nann A Fangue, and Anne E Todgham. 2023. “Effects of Turbidity, Temperature and Predation Cue on the Stress Response of Juvenile Delta Smelt.” Conservation Physiology 11 (1): coad036. https://doi.org/10.1093/conphys/coad036.

Vantaggiato, Francesca Pia, and Mark Lubell. 2023. “Functional Differentiation in Governance Networks for Sea Level Rise Adaptation in the San Francisco Bay Area.” Social Networks, Social Networks and Anthropogenic Climate Change, 75 (October): 16–28. https://doi.org/10.1016/j.socnet.2022.02.010.